PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0404
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LFY
Protein Properties Length: 406aa    MW: 45235.9 Da    PI: 7.0511
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0404genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY6372.9e-19413871385
      FLO_LFY   1 mdpeafsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklr......eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmk 91 
                  mdpe+f++  +fkwdpr ++a++parl+e  a++++p+++a+aaaa  +       ++eelf+ayG+ry+t+akiaelGftv+tL++mk+eeld++m+
  Gh_A07G0404   1 MDPETFASGsFFKWDPRGMMAPTPARLMEAVAAVPQPQTVAVAAAAAYMGrprelgGIEELFQAYGIRYYTAAKIAELGFTVNTLLGMKEEELDEMMN 98 
                  9****977559***********9*****99999999966665555544334777889***************************************** PP

      FLO_LFY  92 slseifrldllvGeryGikaavraerrrleeeeaekkrrkll......sedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekksee 183
                  s+s+ifr++llvGeryGikaavraerrrleee+  ++rr+l+      ++  ++aldalsqeglseepvq+ekeaagsgg g  ++e+v         
  Gh_A07G0404  99 SVSQIFRWELLVGERYGIKAAVRAERRRLEEED--SRRRHLVlgdtttTTTAANALDALSQEGLSEEPVQQEKEAAGSGGWG--TWEMVIGGG----- 187
                  *******************************88..66666663554333333449***********************9988..999999883..... PP

      FLO_LFY 184 ekkkaskkkqkrkkkkelkseededee.eeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtk 280
                  ++k++   ++++ +kk ++ ++ ++ e  ++d+++ ++g +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iak+rGekcPtk
  Gh_A07G0404 188 RRKQQ---RRRKGQKKVVEVDNGDEFEgGDDDDENGDGGGGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKDRGEKCPTK 282
                  23333...22222333333334444440444445555677788******************************************************* PP

      FLO_LFY 281 vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLC 378
                  vtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplv+iaarqgwdida+fnahprL+iWYvPtkLrqLC
  Gh_A07G0404 283 VTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVSIAARQGWDIDAIFNAHPRLAIWYVPTKLRQLC 380
                  ************************************************************************************************** PP

      FLO_LFY 379 hlerska 385
                  h+er+ a
  Gh_A07G0404 381 HAERNGA 387
                  ****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.6E-2061387IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDPETFASGS FFKWDPRGMM APTPARLMEA VAAVPQPQTV AVAAAAAYMG RPRELGGIEE  60
LFQAYGIRYY TAAKIAELGF TVNTLLGMKE EELDEMMNSV SQIFRWELLV GERYGIKAAV  120
RAERRRLEEE DSRRRHLVLG DTTTTTTAAN ALDALSQEGL SEEPVQQEKE AAGSGGWGTW  180
EMVIGGGRRK QQRRRKGQKK VVEVDNGDEF EGGDDDDENG DGGGGGYERQ REHPFIVTEP  240
GEVARGKKNG LDYLFHLYEQ CRDFLIQVQN IAKDRGEKCP TKVTNQVFRY AKKAGASYIN  300
KPKMRHYVHC YALHCLDEEA SNALRRAFKE RGENVGAWRQ ACYKPLVSIA ARQGWDIDAI  360
FNAHPRLAIW YVPTKLRQLC HAERNGAAVV AAASSSVSGG HDHMGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1122263992183PROTEIN LEAFY
2vy2_A1e-1122263992183PROTEIN LEAFY
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7951310.0JN795131.1 Gossypium hirsutum LFY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467284.10.0PREDICTED: floricaula/leafy homolog isoform X1
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A0K0K3Y70.0A0A0K0K3Y7_G
STRINGPOPTR_0015s11820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79072841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-154floral meristem identity control protein LEAFY (LFY)